
Project Overview
Project title: An observational cohort study of patients with subclinical cryptococcal meningitis, excluded from the EFFECT trial due to positive lumbar puncture.
Project summary: The subEFFECT Study is an observational prospective cohort study investigating the pathophysiology and clinical outcomes of subclinical CM (asymptomatic disease but with fungus detected in the brain) in adults with advanced HIV in South Africa and Tanzania. Data on this understudied group will help to inform future management strategies, and increase understanding of host-pathogen interactions in the context of cryptococcosis.
Key Objectives
Primary Outcomes
Secondary Outcomes
Sub-EFFECT Background
The Sub-EFFECT Study is an observational cohort study of patients with subclinical cryptococcal meningitis, who are excluded from the EFFECT trial (Efficacy of Flucytosine and Fluconazole as Early Cryptococcosis Treatment. EFFECT is a randomised control trial, which aims to compare the efficacy of an oral combination of fluconazole plus flucytosine with fluconazole alone (the current recommended treatment) in reducing all-cause mortality in patients living with HIV with CD4 counts of <100 cells/µL and asymptomatic cryptococcal antigenaemia (blood CrAg-positive patients) in Tanzania and South Africa. There is now a considerable body of evidence revealing that CrAg-positive patients have substantially higher mortality compared to CrAg-negative patients with similar CD4 counts, despite pre-emptive treatment with fluconazole (25%-33% mortality vs. 9%-15% in different studies)(1–3). A recent study investigating cause of death among asymptomatic CrAg-positive patients in South Africa observed cryptococcal-related deaths following fluconazole monotherapy indicating that this is inadequate pre-emptive treatment(2).
One possible explanation for excess mortality among CrAg-positive patients, is that despite an absence of meningitis signs and symptoms, up to 40% have subclinical cryptococcal meningitis (CM) (cerebrospinal fluid (CSF) positive for Cryptococcus sp by culture, india ink microscopy and/or CrAg test), at the time of the screening blood test, with an increased risk in those with higher blood CrAg titres(3,4) (Figure 1). Recent clinical guidelines therefore recommend performing lumbar punctures (LPs) in all blood CrAg-positive patients, irrespective of symptoms or signs of meningitis(5). In accordance with these guidelines, all patients eligible for the EFFECT study will be offered a LP, and will be excluded if Cryptococcus sp is detected in the CSF. These patients will then be treated routinely for CM by their usual practitioners and invited to participate in the sub-EFFECT observational cohort study at participating sites.

Figure 1 Blood CrAg titers at time of screening in patients with subclinical CM. Image from Wake et al. High Cryptococcal Antigen Titers in Blood Are Predictive of Subclinical Cryptococcal Meningitis Among Human Immunodeficiency Virus-Infected Patients. Clin Infect Dis. 2018(4).
The clinical course of subclinical CM has not been well described. Since higher CrAg titres are known to be associated with a higher risk of death in patients treated with fluconazole monotherapy(2,6,7), it is expected that the prevalence of undiagnosed subclinical CM may be contributing to excess mortality in CrAg screening programmes. However, in a prospective study of CrAg-positive patients, where subclinical CM was identified and treated, there was no increased risk of death associated with CM compared to CrAg-positive patients with negative LPs. Six month mortality was 22/101 (22%)(4), below that observed among CM patients in other comparable non-study settings, indicating that subclinical CM is an earlier or less severe form of disease (Figure 2).

Figure 2 Risk of subsequent CM and mortality associated with different phases of a clinical spectrum of cyptococcal antigenaemia: asymptomatic CrAgaemia (CSF negative); subclinical CM (asymptomatic, CSF positive); and clinical CM (CSF positive). From Wake et al. Cryptococcal Antigenemia in Advanced HIV: Pathophysiology, Epidemiology and Clinical Implications. Accepted for publication CID 2022(8)
This study will investigate the pathophysiology and clinical outcomes of subclinical CM in order to inform future management strategies, and to increase understanding of host-pathogen interactions in the context of cryptococcosis. Analysing clinical features and parameters of inflammation among individuals with subclinical CM will allow us to delineate if the lack of symptomatic meningism is due to very small quantities of Cryptococcus sp in the CNS at the time of testing, or whether there are any host or organism-related factors that result in subclinical levels of meningeal inflammation. Following up patients with subclinical CM at the time of CrAg screening, will allow us to assess response to treatment, and estimate survival rates. Comparisons with patients enrolled in the EFFECT study, and surveillance data of similar cohorts of patients with clinical CM treated at the same hospitals in South Africa (and CM participants from Tanzania enrolled as part of this study) can then be made. Understanding the pathophysiology and risk of death among patients with subclinical CM will inform future policy regarding the management of patients with asymptomatic cryptococcal antigenaemia. It may, for instance, be adviseable to offer combination antifungal treatment, such as with fluconazole and flucytosine (depending on the results of the EFFECT study), to all patients irrespective of CSF results, if the patient remains asymptomatic. This could potentially avoid hospital admission for LPs and intravenous treatment for this subgroup, reducing financial costs to the health service and opportunity costs to the patient.
Current Status
Eligibility Criteria
Patient Exclusion Criteria
Recruitment / Site Participation
63 enrolled into asymptomatic cohort
461 enrolled into symptomatic cohort
11 sites in South Africa and Tanzania:
Funding
Springboard award, UK:
Academy of Medical Sciences (AMS) supported by Wellcome Trust, Government Department of Business, Energy and Industrial Strategy (BEIS), British Heart Foundation and Diabetes UK and Global Challenges Research Fund (GCRF), the National Institute for Health Research, and NIHR Global Health Research Group on HIV-associated Infections (IMPRINT) .
Team Members
References
Publications and Abstract
976 – Pathway to Care Among Inpatients With Symptomatic Cryptococcal Meningitis in Johannesburg, SA
1. Edkins LF, Berghammer-Bohmer R, Thombrayil AMK, et al. Pathway to Care Among Inpatients with Symptomatic Cryptococcal Meningitis in Johannesburg, SA. CROI 2025. Poster 976.
Conference Dates and Location: March 9-12, 2025 | San Francisco, CA
Abstract Number: 976
Session Title: (N-05) Cryptococcal Meningitis: Where Do We Go From Here?
Pathway to care among inpatients with symptomatic Cryptococcal Meningitis in urban South Africa
2. Edkins LF, Berghammer-Bohmer R, Verhagen DL, et al. Pathway to Care Among Inpatients With Symptomatic Cryptococcal Meningitis in Urban South Africa.SAHCS Conference 2025. Poster 54.
Cryptococcal antigen (CrAg) screening and pre-emptive treatment reduces risk of HIV-associated cryptococcal meningitis (CM) and death1. Understanding the pathway to care following serum CrAg screening is crucial for improving screening practices for people with advanced HIV disease…
Illuminating the full spectrum of cryptococcal disease through linked clinical trial, cohort and surveillance studies
Molloy S et al. AIDS-related Mycoses Workshop. Cape Town, SOuth Africa. 2024
Dates: 10-12 July 2024
Molloy S and Wake R et al. Pathophysiology and clinical outcomes of subclinical cryptococcal meningitis.
St George’s University of London Research Day. UK 2024



